MDANCE Logo

About

  • MDANCE: Molecular Dynamics Analysis with N-ary Clustering Ensembles
  • Getting Started

Examples

  • Learn NANI in 60 seconds!
  • Preprocessing of Molecular Dynamics Data
  • Cluster Analysis
  • Clustering Results Postprocessing

MDANCE's Tutorials

  • k-means NANI Tutorial
  • eQual - Extended Quality Clustering
  • PRIME Tutorial
  • SHINE tutorial
  • HELM - Hierarchical Extended Linkage Method

MDANCE's API

  • mdance.cluster
  • mdance.cli
  • mdance.data
  • mdance.inputs
  • mdance.outputs
  • mdance.prime
  • mdance.tools
MDANCE
  • Indices and tables
  • View page source

Molecular Dynamics Analysis with N-ary Clustering Ensembles (MDANCE) is a flexible n-ary clustering package that provides a set of tools for clustering Molecular Dynamics trajectories.

About

  • MDANCE: Molecular Dynamics Analysis with N-ary Clustering Ensembles
    • The Problem
    • Our Solution
    • Key Features
    • Quick Start
    • Publications
    • Impact
    • Contributing
    • Funding
  • Getting Started
    • Installation
    • Usage

Examples

  • Learn NANI in 60 seconds!
    • NANI
  • Preprocessing of Molecular Dynamics Data
  • Cluster Analysis
  • Clustering Results Postprocessing

MDANCE's Tutorials

  • k-means NANI Tutorial
    • Overview
    • Tutorial
  • eQual - Extended Quality Clustering
    • Overview
    • Tutorial
  • PRIME Tutorial
    • Overview
    • Tutorial
    • Further Reading
  • SHINE tutorial
  • HELM - Hierarchical Extended Linkage Method
    • Overview
    • Tutorial

MDANCE's API

  • mdance.cluster
    • mdance.cluster.nani
    • mdance.cluster.equal
    • mdance.cluster.helm
    • mdance.cluster.shine
  • mdance.cli
    • mdance.cli.prime_sim
    • mdance.cli.prime_rep
  • mdance.data
    • mdance.data.top
    • mdance.data.traj
    • mdance.data.sim_traj_numpy
    • mdance.data.cc_sim
    • mdance.data.trimmed_sim
    • mdance.data.blob_disk
    • mdance.data.diamonds
    • mdance.data.ellipses
  • mdance.inputs
    • mdance.inputs.preprocess
  • mdance.outputs
    • mdance.outputs.postprocess
  • mdance.prime
    • mdance.prime.sim_calc
    • mdance.prime.rep_frames
  • mdance.tools
    • mdance.tools.bts
    • mdance.tools.isim
    • mdance.tools.esim

Indices and tables

  • Index

  • Module Index

  • Search Page

Next

© Copyright 2024, Lexin Chen and Ramón Alain Miranda Quintana.

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